STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerDIntegrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Belongs to the 'phage' integrase family. XerH subfamily. (355 aa)    
Predicted Functional Partners:
Cla_0734
Aspartate racemase; Pfam match to PF01177.13 Asp_Glu_race; Belongs to the aspartate/glutamate racemases family.
       0.804
ctsW
Conserved hypothetical protein, possible purine/pyrimidine phosphoribosyltransferase.
  
    0.752
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.689
ftsK
DNA segregation ATPase FtsK/SpoIIIE; Contains possible alternative start; Pfam matches to PF01580.9 FtsK_SpoIIIE, and to PF09397.1 Ftsk_gamma; Belongs to the FtsK/SpoIIIE/SftA family.
  
   
 0.648
Cla_0819
Conserved hypothetical protein.
 
     0.625
moeA2
Molybdopterin biosynthesis protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
   
   0.624
tyrA
Prephenate dehydrogenase; Pfam match to PF02153.8 PDH.
  
    0.622
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
     
 0.621
parB
Chromosome partitioning protein ParB; Pfam match to PF02195.9 ParBc; Belongs to the ParB family.
  
  
 0.606
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
  
 0.580
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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