STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Cla_0751ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran. (241 aa)    
Predicted Functional Partners:
Cla_0976
Putative permease, YjgP/YjgQ family; Pfam match to PF03739.5 YjgP_YjgQ.
   
 0.964
Cla_1363
Conserved hypothetical integral membrane protein; Pfam match to PF03739.5 YjgP_YjgQ.
   
 0.964
Cla_0658
OstA family protein; Pfam match to PF03968.5 OstA.
  
  
 0.892
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.840
Cla_0753
S4 RNA-binding domain protein; Pfam match to PF01479.16 S4.
  
    0.827
Cla_0749
Conserved hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.825
tsaE
Conserved hypothetical protein (UPF0079 domain protein); Pfam match to PF02367.8 UPF0079.
       0.825
lpxA
UDP-N-acetylglucosamine acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.667
argG
Argininosuccinate synthetase; Pfam match to PF00764.10 Arginosuc_synth; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
       0.647
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
       0.641
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.