STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0774Conserved hypothetical protein, putative HAD superfamily hydrolase; Pfam match to PF00702.17 Hydrolase. (208 aa)    
Predicted Functional Partners:
Cla_0387
Conserved hypothetical protein, putative HAD superfamily hydrolase; Pfam match to PF00702.17 Hydrolase.
  
  
  0.973
HprA
2-hydroxyacid dehydrogenase family protein; Pfam match to PF00389.21 2-Hacid_dh.
 
  
  0.914
glcD
Glycolate oxidase; Pfam matches to PF01565.14 FAD_binding_4, and to PF02913.10 FAD-oxidase_C.
    
 0.911
Cla_1132
Conserved hypothetical protein, putative iron-sulfur-cluster binding protein; Pfam matches to PF02754.7 CCG, and to PF02754.7 CCG.
     
  0.900
kefB
Sodium/hydrogen exchanger family protein; Pfam matches to PF00999.12 Na_H_Exchanger, and to PF02254.9 TrkA_N; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
       0.813
Cla_0772
Conserved hypothetical protein.
       0.804
Cla_0773
Conserved hypothetical protein (DUF2018 domain protein); Pfam match to PF09442.1 DUF2018.
       0.804
Cla_0775
Conserved hypothetical protein.
       0.804
hspR
Transcriptional regulator, MerR family; Pfam match to PF00376.14 MerR.
       0.747
cbpA
Co-chaperone-curved DNA binding protein A; Pfam matches to PF00226.22 DnaJ, and to PF01556.9 DnaJ_C.
       0.747
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.