STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Cla_0795Conserved hypothetical integral membrane protein, MATE family efflux protein; Pfam matches to PF01554.9 MatE, and to PF01554.9 MatE. (438 aa)    
Predicted Functional Partners:
Cla_0794
Conserved hypothetical protein (DUF45 domain protein); Pfam match to PF01863.8 DUF45.
  
    0.826
hypF
Transcriptional regulatory protein HypF; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide.
       0.750
Cla_0793
Conserved hypothetical protein.
       0.750
hypD
Hydrogenase expression/formation protein HypD; Pfam match to PF01924.7 HypD; Belongs to the HypD family.
       0.620
hypC
Hydrogenase assembly chaperone HypC; Pfam match to PF01455.9 HupF_HypC.
       0.620
hypB
Hydrogenase accessory protein HypB; Pfam match to PF02492.10 cobW.
       0.620
hypE
Hydrogenase expression/formation protein HypE; Pfam matches to PF00586.15 AIRS, and to PF02769.13 AIRS_C.
       0.609
hypA
Hydrogenase expression/formation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
       0.600
gapA
Glyceraldehyde-3-phosphate dehydrogenase; Pfam matches to PF00044.15 Gp_dh_N, and to PF02800.11 Gp_dh_C; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.595
rpsA
30S ribosomal protein S1; Pfam matches to PF00575.14 S1, and to PF00575.14 S1.
   
    0.580
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.