STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0805Conserved hypothetical protein, putative peptidase S24; Pfam match to PF00717.14 Peptidase_S24. (211 aa)    
Predicted Functional Partners:
napL
Periplasmic protein NapL.
  
     0.747
Cla_1496
Conserved hypothetical protein.
  
     0.747
atpF
ATP synthase F0 sector, B' subunit; Pfam match to PF00430.9 ATP-synt_B; Belongs to the ATPase B chain family.
  
     0.717
pglB
Oligosaccharide transferase to N-glycosylate proteins; Oligosaccharyl transferase (OST) that catalyzes the initial transfer of a defined glycan (GalNAc(2)GlcGalNAc(3)Bac(NAc)(2) in eubacteria, where Bac(NAc)(2) is di-N-acetyl bacillosamine) from the lipid carrier undecaprenol-pyrophosphate to an asparagine residue within an Asp/Glu-Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation.
  
     0.713
holA
Conserved hypothetical protein; Pfam match to PF06144.4 DNA_pol3_delta.
  
     0.702
Cla_0426
Nucleotidyltransferase, GlnD family.
  
     0.693
cccA
Cytochrome c family protein; Pfam match to PF00034.12 Cytochrom_C.
  
     0.667
mreC
Rod shape-determining protein MreC.
  
     0.662
trxC
Possible periplasmic thioredoxin; Pfam match to PF00085.11 Thioredoxin.
  
     0.656
Cla_0695
TrkA domain protein; Pfam match to PF02080.12 TrkA_C.
  
     0.648
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.