STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0807Cytochrome c family protein. (688 aa)    
Predicted Functional Partners:
fdhB
Formate dehydrogenase, beta (iron-sulfur) subunit; Pfam match to PF00037.18 Fer4.
  
 
 0.852
napG
Fe-S ferredoxin-type protein; Pfam match to PF00037.18 Fer4.
 
 
 0.828
Cla_0806
Cytochrome c family protein; Respiratory sulfite reductase that catalyzes the reduction of sulfite to sulfide in a single step, consuming six electrons in the process; Belongs to the multiheme cytochrome c family.
       0.681
Cla_0809
Cytochrome c biogenesis protein; Pfam match to PF01578.11 Cytochrom_C_asm.
       0.656
napA
Periplasmic nitrate reductase, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
 
 
 0.620
Cla_0808
Conserved hypothetical lipoprotein.
       0.619
fdhA
Formate dehydrogenase, alpha subunit (selenocysteine-containing); Pfam matches to PF04879.7 Molybdop_Fe4S4, and to PF00384.13 Molybdopterin; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.560
Cla_1164
Conserved hypothetical protein, possible lipoprotein thioredoxin; Pfam match to PF08534.1 Redoxin.
  
     0.446
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.