Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cla_0819Conserved hypothetical protein. (856 aa)    
Predicted Functional Partners:
petC
Ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit.
  
 
   0.945
petA
Ubiquinol cytochrome c oxidoreductase, 2Fe-2S subunit; Pfam match to PF00355.17 Rieske.
  
 
   0.823
mdh
Malate dehydrogenase; Pfam matches to PF00056.14 Ldh_1_N, and to PF02866.9 Ldh_1_C; Belongs to the LDH/MDH superfamily.
     
 0.795
holA
Conserved hypothetical protein; Pfam match to PF06144.4 DNA_pol3_delta.
  
     0.774
Cla_1510
Conserved hypothetical protein (RDD domain protein); Pfam match to PF06271.3 RDD.
  
     0.773
Cla_0912
Conserved hypothetical protein.
  
     0.771
trxC
Possible periplasmic thioredoxin; Pfam match to PF00085.11 Thioredoxin.
  
 
   0.769
Cla_1496
Conserved hypothetical protein.
  
     0.767
ybgF
Conserved hypothetical protein.
  
     0.766
Cla_0960
Conserved hypothetical lipoprotein.
  
     0.763
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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