STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0854Conserved hypothetical protein. (289 aa)    
Predicted Functional Partners:
Cla_0862
Phage portal protein, HK97 family; Pfam match to PF04860.3 Phage_portal.
  
   0.894
Cla_0855
Conserved hypothetical protein.
     
 0.807
Cla_0853
Conserved hypothetical protein.
  
   0.758
Cla_0852
Major capsid protein, HK97 family; Pfam match to PF05065.4 Phage_capsid.
  
   0.753
Cla_0856
Hypothetical protein.
       0.705
Cla_0857
Conserved hypothetical protein.
       0.705
Cla_0842
Conserved hypothetical protein.
       0.583
Cla_0841
Conserved hypothetical protein.
       0.564
Cla_0843
Conserved hypothetical protein (DUF1353 domain protein); Pfam match to PF07087.2 DUF1353.
       0.564
Cla_0844
Conserved hypothetical protein.
       0.564
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.