STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0860Conserved hypothetical protein. (116 aa)    
Predicted Functional Partners:
Cla_0861
Phage protein, HK97 gp10 family.
       0.784
Cla_0862
Phage portal protein, HK97 family; Pfam match to PF04860.3 Phage_portal.
       0.783
Cla_0858
Conserved hypothetical protein.
       0.588
Cla_0859
Conserved hypothetical protein.
       0.588
Cla_0863
Uncharacterized phage-encoded protein; Pfam match to PF09669.1 Phage_pRha.
       0.559
Cla_0856
Hypothetical protein.
       0.433
Cla_0857
Conserved hypothetical protein.
       0.433
Cla_0854
Conserved hypothetical protein.
       0.402
Cla_0855
Conserved hypothetical protein.
       0.402
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.