STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0867Phage terminase, large subunit, putative; Pfam match to PF03354.6 Terminase_1. (543 aa)    
Predicted Functional Partners:
Cla_0869
HNH endonuclease domain protein; Pfam match to PF01844.14 HNH.
 
  
 0.954
Cla_0862
Phage portal protein, HK97 family; Pfam match to PF04860.3 Phage_portal.
 
   
 0.840
Cla_0868
Phage terminase, small subunit, putative.
       0.784
Cla_0852
Major capsid protein, HK97 family; Pfam match to PF05065.4 Phage_capsid.
 
     0.783
Cla_0863
Uncharacterized phage-encoded protein; Pfam match to PF09669.1 Phage_pRha.
  
     0.515
Cla_0870
Conserved hypothetical protein.
       0.425
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.