STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0875Conserved hypothetical protein, putative peptidyl-arginine deiminase; Pfam match to PF04371.6 PAD_porph; Belongs to the agmatine deiminase family. (255 aa)    
Predicted Functional Partners:
aguB
Hydrolase, carbon-nitrogen family; Pfam match to PF00795.13 CN_hydrolase.
 
 
 0.980
aguA
Peptidyl-arginine deiminase family protein; Pfam match to PF04371.6 PAD_porph; Belongs to the agmatine deiminase family.
  
  
 
0.928
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
 
  
 0.927
Cla_0458
Saccharopine dehydrogenase; Pfam match to PF03435.9 Saccharop_dh.
    
  0.905
Cla_0874
Conserved hypothetical protein.
       0.785
Cla_0876
Hypothetical protein.
       0.693
Cla_0873
Conserved hypothetical protein.
       0.543
Cla_0877
Conserved hypothetical protein, putative ATPase, AAA family; Pfam match to PF00004.20 AAA.
       0.508
Cla_0878
Hypothetical protein.
       0.489
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.