Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cla_0890NAD-dependent protein deacetylase (SIR2 family), putative; Pfam match to PF02146.8 SIR2. (275 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase, beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.794
rpoC
DNA-directed RNA polymerase, beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.794
Cla_0891
Hypothetical protein.
       0.773
Cla_0889
Conserved hypothetical protein (DUF262 domain protein); Pfam match to PF03235.5 DUF262.
       0.689
pta
Phosphate acetyltransferase; Pfam match to PF01515.10 PTA_PTB.
  
  
 0.681
Cla_0888
Conserved hypothetical protein (DUF262 domain protein); Pfam match to PF03235.5 DUF262.
       0.680
dnaE
DNA polymerase III, alpha chain; Pfam matches to PF02811.10 PHP, and to PF07733.3 DNA_pol3_alpha.
       0.595
gdhA
Glutamate dehydrogenase; Pfam matches to PF02812.9 ELFV_dehydrog_N, and to PF00208.12 ELFV_dehydrog; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
 0.499
Cla_0730
Conserved hypothetical protein.
   
  0.444
napL
Periplasmic protein NapL.
   
  0.444
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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