STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0896Pfam match to PF01545.12 Cation_efflux; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (304 aa)    
Predicted Functional Partners:
aguA
Peptidyl-arginine deiminase family protein; Pfam match to PF04371.6 PAD_porph; Belongs to the agmatine deiminase family.
  
    0.825
mdh
Malate dehydrogenase; Pfam matches to PF00056.14 Ldh_1_N, and to PF02866.9 Ldh_1_C; Belongs to the LDH/MDH superfamily.
 
    0.819
aguB
Hydrolase, carbon-nitrogen family; Pfam match to PF00795.13 CN_hydrolase.
   
   0.814
thiJ
4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein; Pfam match to PF01965.15 DJ-1_PfpI.
       0.800
Cla_0899
Conserved hypothetical protein, putative hydrolase (metallo-beta-lactamase family); Pfam match to PF00753.18 Lactamase_B.
 
     0.744
Cla_0893
Hypothetical protein.
       0.677
Cla_0898
Hypothetical protein.
       0.626
dnaE
DNA polymerase III, alpha chain; Pfam matches to PF02811.10 PHP, and to PF07733.3 DNA_pol3_alpha.
       0.486
glnH
Glutamine-binding periplasmic protein; Pfam match to PF00497.11 SBP_bac_3.
  
    0.483
thrC
Threonine synthase; Pfam match to PF00291.16 PALP.
       0.475
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.