STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0899Conserved hypothetical protein, putative hydrolase (metallo-beta-lactamase family); Pfam match to PF00753.18 Lactamase_B. (199 aa)    
Predicted Functional Partners:
Cla_0898
Hypothetical protein.
       0.804
thiJ
4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein; Pfam match to PF01965.15 DJ-1_PfpI.
   
 
 0.750
Cla_0896
Pfam match to PF01545.12 Cation_efflux; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
     0.744
thrC
Threonine synthase; Pfam match to PF00291.16 PALP.
  
    0.633
nadE
NH(3)-dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.
  
    0.631
aguA
Peptidyl-arginine deiminase family protein; Pfam match to PF04371.6 PAD_porph; Belongs to the agmatine deiminase family.
  
    0.629
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
       0.629
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase; Pfam match to PF02348.10 CTP_transf_3; Belongs to the KdsB family.
       0.629
aguB
Hydrolase, carbon-nitrogen family; Pfam match to PF00795.13 CN_hydrolase.
   
   0.627
glnH
Glutamine-binding periplasmic protein; Pfam match to PF00497.11 SBP_bac_3.
       0.582
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.