STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glnPAmino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Pfam match to PF00528.13 BPD_transp_1. (260 aa)    
Predicted Functional Partners:
glnH
Glutamine-binding periplasmic protein; Pfam match to PF00497.11 SBP_bac_3.
 0.996
cjaC
Amino acid ABC transporter, permease/substrate-binding lipoprotein; Pfam match to PF00497.11 SBP_bac_3.
 
 0.984
Cla_0598
Amino acid ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
 
 0.937
papQ
Conserved hypothetical protein, ABC transporter, His/Glu/Gln/Arg/opine family (ATP-binding protein); Pfam match to PF00005.18 ABC_tran.
 
 0.936
Cla_0691
Conserved hypothetical protein, ABC transporter, His/Glu/Gln/Arg/opine family (permease protein); Pfam match to PF00528.13 BPD_transp_1.
 
 
0.652
cjaA
Amino acid ABC transporter, periplasmic solute-binding lipoprotein; Pfam match to PF00497.11 SBP_bac_3.
  
 
 0.557
dsbD
Thiol:disulfide interchange protein DsbD; Pfam match to PF02683.6 DsbD.
       0.533
Cla_0907
Conserved hypothetical protein (MOSC domain protein); Pfam match to PF03473.8 MOSC.
       0.506
Cla_0599
Amino acid ABC transporter, permease protein; Pfam match to PF00528.13 BPD_transp_1.
  
  
 
0.501
papP
Conserved hypothetical protein, ABC transporter, His/Glu/Gln/Arg/opine family (permease protein); Pfam match to PF00528.13 BPD_transp_1.
  
  
 
0.481
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.