STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsbDThiol:disulfide interchange protein DsbD; Pfam match to PF02683.6 DsbD. (563 aa)    
Predicted Functional Partners:
Cla_1288
Conserved hypothetical protein.
  
 
 0.926
ccsBA
Cytochrome c biogenesis protein, CcmF/CycK/CcsA family; Pfam match to PF01578.11 Cytochrom_C_asm.
     
 0.896
trx
Thioredoxin; Pfam match to PF00085.11 Thioredoxin; Belongs to the thioredoxin family.
   
 
 0.887
dsbA
Thiol:disulfide interchange protein, DsbA family.
  
   
 0.874
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
    
 
 0.850
trxC
Possible periplasmic thioredoxin; Pfam match to PF00085.11 Thioredoxin.
  
 
 0.843
Cla_1212
Conserved hypothetical lipoprotein; Pfam match to PF00578.12 AhpC-TSA.
  
 
 0.843
lptD
Conserved hypothetical protein, putative organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
      
 0.804
Cla_0907
Conserved hypothetical protein (MOSC domain protein); Pfam match to PF03473.8 MOSC.
       0.804
Cla_1163
Conserved hypothetical protein, possible lipoprotein thioredoxin.
  
 
 0.801
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.