STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndhNADH dehydrogenase; Pfam match to PF00070.18 Pyr_redox. (391 aa)    
Predicted Functional Partners:
hyaD
Ni/Fe hydrogenase, expression/formation protein; Pfam match to PF01750.9 HycI.
    
 
 0.685
putA
Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
   
  
 0.562
Cla_0909
Sodium-dependent transporter (SNF family); Pfam match to PF00209.9 SNF; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
       0.557
slyD
FKBP-type peptidyl-prolyl cis-trans isomerase; Pfam match to PF00254.19 FKBP_C.
  
    0.548
por
Pyruvate ferredoxin/flavodoxin oxidoreductase; Pfam matches to PF01855.10 POR_N, and to PF01558.9 POR.
   
  
 0.533
nuoL
NADH-quinone oxidoreductase, L subunit; Pfam matches to PF00662.11 Oxidored_q1_N, and to PF00361.11 Oxidored_q1.
   
  
 0.443
petA
Ubiquinol cytochrome c oxidoreductase, 2Fe-2S subunit; Pfam match to PF00355.17 Rieske.
   
  
 0.404
frdB
Fumarate reductase, iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
  
 0.401
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.