STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0912Conserved hypothetical protein. (443 aa)    
Predicted Functional Partners:
iamB
Putative ABC transporter, permease protein (DUF140 domain protein); Pfam match to PF02405.7 DUF140.
  
 
 0.961
Cla_0911
Chemotaxis protein MotB, putative; Pfam match to PF00691.11 OmpA.
 
 
   0.938
iamA
Putative ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
  
 
 0.867
Cla_0819
Conserved hypothetical protein.
  
     0.771
holA
Conserved hypothetical protein; Pfam match to PF06144.4 DNA_pol3_delta.
  
     0.765
trxC
Possible periplasmic thioredoxin; Pfam match to PF00085.11 Thioredoxin.
  
     0.753
Cla_0114
Conserved hypothetical protein.
 
     0.750
Cla_1303
Conserved hypothetical protein, methyltransferase type 12 domain; Pfam match to PF08242.3 Methyltransf_12.
  
 
   0.747
Cla_1496
Conserved hypothetical protein.
  
     0.742
cmeD
Outer membrane component of efflux system; Pfam matches to PF02321.9 OEP, and to PF02321.9 OEP.
  
     0.736
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.