STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0927HIT family hydrolase; Pfam match to PF01230.14 HIT. (162 aa)    
Predicted Functional Partners:
sat
Sulfate adenylyltransferase, putative.
     
  0.900
rpoB
DNA-directed RNA polymerase, beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.884
rpoC
DNA-directed RNA polymerase, beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.884
Cla_0924
Conserved hypothetical protein (UPF0153 domain protein); Pfam match to PF03692.6 UPF0153.
   
   0.821
Cla_0926
Conserved hypothetical protein, putative indole-3-glycerol phosphate synthase; Pfam match to PF00218.12 IGPS.
   
   0.821
Cla_0925
Conserved hypothetical protein, putative ATP-dependent nuclease.
   
   0.813
Cla_0922
Conserved hypothetical protein, putative pyridine nucleotide-disulphide oxidoreductase; Pfam match to PF00070.18 Pyr_redox.
       0.804
Cla_0923
Conserved hypothetical protein, possible methylase; Pfam match to PF05175.5 MTS; Belongs to the methyltransferase superfamily.
       0.804
ybbB
Conserved hypothetical protein, predicted ATP/GTP binding protein; Belongs to the SelU family.
       0.804
aas
Pfam matches to PF07690.7 MFS_1, and to PF01553.12 Acyltransferase.
     
 0.449
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.