STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbBConserved hypothetical protein, predicted ATP/GTP binding protein; Belongs to the SelU family. (327 aa)    
Predicted Functional Partners:
selD
Selenide, water dikinase (possible start at 335663); Pfam match to PF02769.13 AIRS_C.
 
   
 0.834
Cla_0922
Conserved hypothetical protein, putative pyridine nucleotide-disulphide oxidoreductase; Pfam match to PF00070.18 Pyr_redox.
       0.804
Cla_0923
Conserved hypothetical protein, possible methylase; Pfam match to PF05175.5 MTS; Belongs to the methyltransferase superfamily.
       0.804
Cla_0924
Conserved hypothetical protein (UPF0153 domain protein); Pfam match to PF03692.6 UPF0153.
       0.804
Cla_0925
Conserved hypothetical protein, putative ATP-dependent nuclease.
       0.804
Cla_0926
Conserved hypothetical protein, putative indole-3-glycerol phosphate synthase; Pfam match to PF00218.12 IGPS.
       0.804
Cla_0927
HIT family hydrolase; Pfam match to PF01230.14 HIT.
       0.804
mnmC
Conserved hypothetical protein (DUF752 domain protein); Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family.
  
   
 0.480
aas
Pfam matches to PF07690.7 MFS_1, and to PF01553.12 Acyltransferase.
       0.417
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.