| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplD | rpsB | Cla_0060 | Cla_1094 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family. | 0.997 |
| rplD | rpsC | Cla_0060 | Cla_0065 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
| rplD | rpsD | Cla_0060 | Cla_0094 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.998 |
| rplD | rpsF | Cla_0060 | Cla_0951 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.986 |
| rplD | rpsI | Cla_0060 | Cla_0385 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Pfam match to PF00380.10 Ribosomal_S9; Belongs to the universal ribosomal protein uS9 family. | 0.989 |
| rplD | rpsJ | Cla_0060 | Cla_0058 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
| rplD | rpsO | Cla_0060 | Cla_0943 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.996 |
| rplD | rpsP | Cla_0060 | Cla_0996 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Pfam match to PF00886.10 Ribosomal_S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.986 |
| rplD | rpsQ | Cla_0060 | Cla_0068 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |
| rplD | rpsS | Cla_0060 | Cla_0063 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
| rpsB | rplD | Cla_1094 | Cla_0060 | Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family. | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.997 |
| rpsB | rpsC | Cla_1094 | Cla_0065 | Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
| rpsB | rpsD | Cla_1094 | Cla_0094 | Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.997 |
| rpsB | rpsF | Cla_1094 | Cla_0951 | Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.998 |
| rpsB | rpsI | Cla_1094 | Cla_0385 | Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family. | Pfam match to PF00380.10 Ribosomal_S9; Belongs to the universal ribosomal protein uS9 family. | 0.998 |
| rpsB | rpsJ | Cla_1094 | Cla_0058 | Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.997 |
| rpsB | rpsO | Cla_1094 | Cla_0943 | Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.998 |
| rpsB | rpsP | Cla_1094 | Cla_0996 | Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family. | Pfam match to PF00886.10 Ribosomal_S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.997 |
| rpsB | rpsQ | Cla_1094 | Cla_0068 | Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.998 |
| rpsB | rpsS | Cla_1094 | Cla_0063 | Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family. | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.996 |
