STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0966CoA-binding domain protein; Pfam match to PF02629.10 CoA_binding. (129 aa)    
Predicted Functional Partners:
ilvA
Threonine dehydratase; Pfam match to PF00291.16 PALP.
       0.806
Cla_0967
Major facilitator superfamily transporter; Pfam match to PF07690.7 MFS_1.
       0.672
Cla_0964
Putative PAS domain signal transduction sensor protein; Pfam match to PF08447.2 PAS_3.
       0.638
fur
Ferric uptake regulation protein; Pfam match to PF01475.10 FUR; Belongs to the Fur family.
  
    0.557
perR
Peroxide stress regulator; Pfam match to PF01475.10 FUR; Belongs to the Fur family.
  
    0.557
Cla_0963
Putative PAS domain signal transduction sensor protein; Pfam match to PF08447.2 PAS_3.
       0.466
cetA
MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal.
       0.460
flgG2
Flagellar distal rod protein FlgG; Pfam match to PF00460.11 Flg_bb_rod.
    
   0.436
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.