STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0974Conserved hypothetical protein, MadN family (DUF6 domain protein); Pfam match to PF00892.11 DUF6. (292 aa)    
Predicted Functional Partners:
ogt
methylated-DNA--protein-cysteine methyltransferase; Pfam match to PF01035.11 DNA_binding_1.
       0.784
trmA
tRNA (uracil-5-)-methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA).
 
    0.697
Cla_0972
Conserved hypothetical protein, ankyrin repeat domain protein; Pfam match to PF00023.21 Ank.
   
  0.574
Cla_0971
Oxidoreductase, short chain dehydrogenase/reductase family; Pfam match to PF00106.16 adh_short; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.541
nhaC
Na+/H+ antiporter family protein; Pfam match to PF03553.5 Na_H_antiporter.
       0.518
uspA
UspA-related nucleotide-binding protein; Pfam match to PF00582.17 Usp.
 
     0.459
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.