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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_0991Conserved hypothetical protein. (117 aa)    
Predicted Functional Partners:
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
    0.806
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.795
rimM
16S rRNA processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
       0.795
rpsP
Pfam match to PF00886.10 Ribosomal_S16; Belongs to the bacterial ribosomal protein bS16 family.
     
 0.705
Cla_0995
Conserved hypothetical protein.
       0.703
Cla_0989
Conserved hypothetical protein, ArsC family; Pfam match to PF03960.6 ArsC; Belongs to the ArsC family.
       0.645
aroG
3-deoxy-D-arabinoheptulosonate 7-phosphate synthase (DAHP synthetase); Pfam match to PF01474.7 DAHP_synth_2.
       0.636
ccsBA
Cytochrome c biogenesis protein, CcmF/CycK/CcsA family; Pfam match to PF01578.11 Cytochrom_C_asm.
 
     0.625
ffh
Signal recognition particle protein; Pfam matches to PF02881.10 SRP54_N, and to PF00448.13 SRP54.
  
    0.572
Cla_0809
Cytochrome c biogenesis protein; Pfam match to PF01578.11 Cytochrom_C_asm.
 
     0.505
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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