Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1001Conserved hypothetical protein (NIF3 domain protein); Pfam match to PF01784.9 NIF3. (241 aa)    
Predicted Functional Partners:
Cla_1000
Conserved hypothetical protein (DUF164 domain protein); Pfam match to PF02591.6 DUF164.
  
 0.964
folE
Pfam match to PF01227.13 GTP_cyclohydroI.
    
 0.913
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate. Belongs to the DHBP synthase family.
     
  0.900
ribA
GTP cyclohydrolase II; Pfam match to PF00925.11 GTP_cyclohydro2.
     
  0.900
queD
Conserved hypothetical protein, putative 6-pyruvoyl tetrahydropterin synthase.
     
  0.900
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
     
  0.900
glyQ
glycyl-tRNA synthetase, alpha chain; Pfam match to PF02091.6 tRNA-synt_2e.
       0.825
Cla_1003
Conserved hypothetical protein.
       0.825
purE
Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.825
Cla_1005
Peptidase, U32 family; Pfam match to PF01136.10 Peptidase_U32.
       0.825
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.