STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1003Conserved hypothetical protein. (168 aa)    
Predicted Functional Partners:
Cla_1001
Conserved hypothetical protein (NIF3 domain protein); Pfam match to PF01784.9 NIF3.
  
    0.806
glyQ
glycyl-tRNA synthetase, alpha chain; Pfam match to PF02091.6 tRNA-synt_2e.
       0.804
purE
Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.804
Cla_1005
Peptidase, U32 family; Pfam match to PF01136.10 Peptidase_U32.
       0.804
Cla_1006
Conserved hypothetical protein.
       0.804
kdtA
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
       0.795
Cla_1000
Conserved hypothetical protein (DUF164 domain protein); Pfam match to PF02591.6 DUF164.
       0.795
rluA
Putative ribosomal large subunit pseudouridine synthase; Pfam match to PF00849.13 PseudoU_synth_2.
       0.776
ffh
Signal recognition particle protein; Pfam matches to PF02881.10 SRP54_N, and to PF00448.13 SRP54.
       0.613
glnA
Glutamine synthetase; Pfam matches to PF03951.10 Gln-synt_N, and to PF00120.15 Gln-synt_C; Belongs to the glutamine synthetase family.
       0.574
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.