Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ciaDConserved hypothetical protein. (141 aa)    
Predicted Functional Partners:
Cla_1010
Conserved hypothetical protein.
       0.825
ciaI
Conserved hypothetical protein, probable ATP/GTP-binding protein.
      
 0.807
ciaC
Conserved hypothetical protein.
      
 0.792
cca
tRNA nucleotidyltransferase/formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
       0.786
pglH
GalNAc alpha-1,4-transferase; Pfam match to PF00534.11 Glycos_transf_1.
      
 0.683
Cla_1012
Conserved hypothetical protein.
       0.673
napA
Periplasmic nitrate reductase, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
       0.669
Cla_1011
Major facilitator superfamily transporter; Pfam match to PF07690.7 MFS_1.
       0.665
cadF
Outer membrane fibronectin-binding protein; Pfam match to PF00691.11 OmpA.
      
 0.627
napD
Periplasmic nitrate reductase assembly protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
       0.584
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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