STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1011Major facilitator superfamily transporter; Pfam match to PF07690.7 MFS_1. (390 aa)    
Predicted Functional Partners:
Cla_0435
Conserved hypothetical protein (DUF328 domain protein); Pfam match to PF03883.5 DUF328; Belongs to the UPF0246 family.
   
    0.858
Cla_1012
Conserved hypothetical protein.
       0.825
napD
Periplasmic nitrate reductase assembly protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export.
       0.822
napL
Periplasmic protein NapL.
       0.822
napB
Periplasmic nitrate reductase, small subunit, cytochrome c-type protein; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
       0.822
napH
Methylamine utilization ferredoxin-type protein; Pfam match to PF00037.18 Fer4.
       0.822
napG
Fe-S ferredoxin-type protein; Pfam match to PF00037.18 Fer4.
       0.822
napA
Periplasmic nitrate reductase, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
       0.822
ciaD
Conserved hypothetical protein.
       0.665
Cla_1010
Conserved hypothetical protein.
       0.665
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.