STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpeD-ribulose-5-phosphate 3-epimerase; Pfam match to PF00834.10 Ribul_P_3_epim; Belongs to the ribulose-phosphate 3-epimerase family. (215 aa)    
Predicted Functional Partners:
tkt
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
 0.989
rpiB
Ribose 5-phosphate isomerase B; Pfam match to PF02502.9 LacAB_rpiB.
 
 
 0.946
dnaQ
DNA polymerase III, epsilon subunit; Pfam match to PF00929.15 Exonuc_X-T.
       0.804
fliS
Flagellar protein FliS; Pfam match to PF02561.5 FliS.
    
   0.608
rpmB
Pfam match to PF00830.10 Ribosomal_L28; Belongs to the bacterial ribosomal protein bL28 family.
  
    0.607
Cla_1030
Conserved hypothetical protein (TrkA domain protein); Pfam matches to PF07885.7 Ion_trans_2, and to PF02254.9 TrkA_N.
  
  
 0.570
Cla_0774
Conserved hypothetical protein, putative HAD superfamily hydrolase; Pfam match to PF00702.17 Hydrolase.
  
  
 0.553
prsA
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
  
 0.530
pgk
Phosphoglycerate kinase; Pfam match to PF00162.10 PGK; Belongs to the phosphoglycerate kinase family.
 
 
 0.516
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.514
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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