STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1030Conserved hypothetical protein (TrkA domain protein); Pfam matches to PF07885.7 Ion_trans_2, and to PF02254.9 TrkA_N. (375 aa)    
Predicted Functional Partners:
ktrB
TRK system potassium uptake protein TrkB, putative; Pfam match to PF02386.7 TrkH.
  
 
 0.821
rpmB
Pfam match to PF00830.10 Ribosomal_L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.738
Cla_1031
Conserved hypothetical protein (DUF465 domain protein); Pfam match to PF04325.4 DUF465.
       0.681
Cla_1032
MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal.
 
     0.614
moaE
Molybdopterin converting factor, subunit 2; Pfam match to PF02391.8 MoaE.
   
    0.571
rpe
D-ribulose-5-phosphate 3-epimerase; Pfam match to PF00834.10 Ribul_P_3_epim; Belongs to the ribulose-phosphate 3-epimerase family.
  
  
 0.570
Cla_0944
NOL1/NOP2/sun family protein; Pfam match to PF01189.8 Nol1_Nop2_Fmu; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
    0.563
dnaQ
DNA polymerase III, epsilon subunit; Pfam match to PF00929.15 Exonuc_X-T.
       0.560
Cla_1046
Conserved hypothetical protein.
 
     0.555
hemD
Uroporphyrinogen III cosynthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
   
    0.550
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.