Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cla_1031Conserved hypothetical protein (DUF465 domain protein); Pfam match to PF04325.4 DUF465. (71 aa)    
Predicted Functional Partners:
Cla_1032
MCP-domain signal transduction protein; Pfam match to PF00015.12 MCPsignal.
       0.738
Cla_1030
Conserved hypothetical protein (TrkA domain protein); Pfam matches to PF07885.7 Ion_trans_2, and to PF02254.9 TrkA_N.
       0.708
rpmB
Pfam match to PF00830.10 Ribosomal_L28; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.661
dnaQ
DNA polymerase III, epsilon subunit; Pfam match to PF00929.15 Exonuc_X-T.
  
    0.605
rpe
D-ribulose-5-phosphate 3-epimerase; Pfam match to PF00834.10 Ribul_P_3_epim; Belongs to the ribulose-phosphate 3-epimerase family.
       0.534
ccoQ
Cytochrome c oxidase, cbb3-type, subunit IV; Pfam match to PF09672.1 Cbb3_Q_epsi.
   
    0.521
Cla_0664
Sec-independent protein secretion pathway component TatB, putative; Pfam match to PF02416.7 MttA_Hcf106.
  
     0.466
ccoN
Cytochrome c oxidase, cbb3-type, subunit I; Pfam match to PF00115.11 COX1; Belongs to the heme-copper respiratory oxidase family.
   
    0.459
ccoO
Cytochrome c oxidase, cbb3-type, subunit II; Pfam match to PF02433.6 FixO.
   
    0.452
p19
19 kDa periplasmic protein.
  
     0.451
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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