| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| raiA | rplV | Cla_1037 | Cla_0064 | Sigma 54 modulation protein/ribosomal protein S30EA; Pfam match to PF02482.10 Ribosomal_S30AE. | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.883 |
| raiA | rpsA | Cla_1037 | Cla_1190 | Sigma 54 modulation protein/ribosomal protein S30EA; Pfam match to PF02482.10 Ribosomal_S30AE. | 30S ribosomal protein S1; Pfam matches to PF00575.14 S1, and to PF00575.14 S1. | 0.921 |
| raiA | rpsB | Cla_1037 | Cla_1094 | Sigma 54 modulation protein/ribosomal protein S30EA; Pfam match to PF02482.10 Ribosomal_S30AE. | Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family. | 0.932 |
| raiA | rpsC | Cla_1037 | Cla_0065 | Sigma 54 modulation protein/ribosomal protein S30EA; Pfam match to PF02482.10 Ribosomal_S30AE. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.932 |
| raiA | rpsF | Cla_1037 | Cla_0951 | Sigma 54 modulation protein/ribosomal protein S30EA; Pfam match to PF02482.10 Ribosomal_S30AE. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.947 |
| raiA | rpsI | Cla_1037 | Cla_0385 | Sigma 54 modulation protein/ribosomal protein S30EA; Pfam match to PF02482.10 Ribosomal_S30AE. | Pfam match to PF00380.10 Ribosomal_S9; Belongs to the universal ribosomal protein uS9 family. | 0.940 |
| raiA | rpsO | Cla_1037 | Cla_0943 | Sigma 54 modulation protein/ribosomal protein S30EA; Pfam match to PF02482.10 Ribosomal_S30AE. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.933 |
| raiA | rpsQ | Cla_1037 | Cla_0068 | Sigma 54 modulation protein/ribosomal protein S30EA; Pfam match to PF02482.10 Ribosomal_S30AE. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.932 |
| raiA | rpsR | Cla_1037 | Cla_0953 | Sigma 54 modulation protein/ribosomal protein S30EA; Pfam match to PF02482.10 Ribosomal_S30AE. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.932 |
| raiA | rpsT | Cla_1037 | Cla_0016 | Sigma 54 modulation protein/ribosomal protein S30EA; Pfam match to PF02482.10 Ribosomal_S30AE. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.883 |
| rplV | raiA | Cla_0064 | Cla_1037 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | Sigma 54 modulation protein/ribosomal protein S30EA; Pfam match to PF02482.10 Ribosomal_S30AE. | 0.883 |
| rplV | rpsA | Cla_0064 | Cla_1190 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 30S ribosomal protein S1; Pfam matches to PF00575.14 S1, and to PF00575.14 S1. | 0.975 |
| rplV | rpsB | Cla_0064 | Cla_1094 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family. | 0.986 |
| rplV | rpsC | Cla_0064 | Cla_0065 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.998 |
| rplV | rpsF | Cla_0064 | Cla_0951 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.986 |
| rplV | rpsI | Cla_0064 | Cla_0385 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | Pfam match to PF00380.10 Ribosomal_S9; Belongs to the universal ribosomal protein uS9 family. | 0.986 |
| rplV | rpsO | Cla_0064 | Cla_0943 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.983 |
| rplV | rpsQ | Cla_0064 | Cla_0068 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.997 |
| rplV | rpsR | Cla_0064 | Cla_0953 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.986 |
| rplV | rpsT | Cla_0064 | Cla_0016 | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.938 |
