STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1071DegT/DnrJ/EryC1/StrS aminotransferase family enzyme; Pfam match to PF01041.8 DegT_DnrJ_EryC1; Belongs to the DegT/DnrJ/EryC1 family. (360 aa)    
Predicted Functional Partners:
Cla_1070
Oxidoreductase, Gfo/Idh/MocA family; Pfam match to PF01408.13 GFO_IDH_MocA.
 
  
 0.971
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
       0.804
maf
Septum formation protein Maf; Pfam match to PF02545.5 Maf; Belongs to the Maf family.
     
 0.643
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.617
pseB
UDP-GlcNAc C6-dehydratase/C4-reductase; Pfam match to PF02719.6 Polysacc_synt_2.
  
  
 0.604
ptmE
Flagellin modification protein PtmE, putative sugar-phosphate nucleotide transferase; Pfam matches to PF00571.19 CBS, and to PF00483.14 NTP_transferase.
  
    0.602
ptmD
Flagellin modification protein PtmD, putative UDP-N-acetylglucosamine 2-epimerase; Pfam match to PF02350.10 Epimerase_2.
  
  
 0.600
pbpA
Penicillin-binding protein 1A; Pfam matches to PF00912.13 Transgly, and to PF00905.13 Transpeptidase.
       0.598
pglF
UDP-GlcNAc C4,6 dehydratase; Pfam match to PF02719.6 Polysacc_synt_2.
  
  
 0.567
maf5
Motility accessory factor; Pfam match to PF01973.9 DUF115.
   
  
 0.559
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.