STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pbpAPenicillin-binding protein 1A; Pfam matches to PF00912.13 Transgly, and to PF00905.13 Transpeptidase. (644 aa)    
Predicted Functional Partners:
pbpB
Penicillin-binding protein; Pfam matches to PF03717.6 PBP_dimer, and to PF00905.13 Transpeptidase.
  
 
 0.989
pbpC
Penicillin-binding protein 2; Pfam matches to PF03717.6 PBP_dimer, and to PF00905.13 Transpeptidase.
  
 
 0.972
pbpC2
Penicillin-binding protein 1C; Pfam matches to PF00912.13 Transgly, and to PF00905.13 Transpeptidase.
  
  
0.928
murC
UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
   
 0.858
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.825
maf
Septum formation protein Maf; Pfam match to PF02545.5 Maf; Belongs to the Maf family.
       0.825
ftsW
Cell division protein, FtsW/RodA/SpoVE family; Pfam match to PF01098.10 FTSW_RODA_SPOVE; Belongs to the SEDS family.
  
 
 
 0.759
mreC
Rod shape-determining protein MreC.
   
 
 0.754
Cla_1220
Peptidase, M23/M37 family; Pfam match to PF01551.13 Peptidase_M23.
  
   
 0.704
pabC
4-amino-4-deoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
   
 0.689
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.