STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1080Conserved hypothetical protein, putative multidrug resistance efflux protein; Pfam match to PF00893.10 Multi_Drug_Res. (113 aa)    
Predicted Functional Partners:
Cla_1079
Conserved hypothetical protein, putative multidrug resistance efflux protein; Pfam match to PF00893.10 Multi_Drug_Res.
 
     0.953
Cla_1081
Conserved hypothetical protein (DUF28 domain protein); Pfam match to PF01709.11 DUF28.
       0.523
ppi
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.516
copA
Cation-transporting ATPase, P-type; Pfam matches to PF00403.17 HMA, and to PF00122.11 E1-E2_ATPase.
       0.479
Cla_1083
Conserved hypothetical protein.
       0.424
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.