STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1081Conserved hypothetical protein (DUF28 domain protein); Pfam match to PF01709.11 DUF28. (235 aa)    
Predicted Functional Partners:
ppi
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
  
 0.820
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
   0.719
Cla_1083
Conserved hypothetical protein.
       0.692
rplQ
Pfam match to PF01196.10 Ribosomal_L17.
 
   0.689
rpmF
Pfam match to PF01783.14 Ribosomal_L32p; Belongs to the bacterial ribosomal protein bL32 family.
   
   0.674
Cla_0784
Transcriptional regulator, Crp/Fnr family; Pfam match to PF00325.11 Crp.
      
 0.653
Cla_0872
Conserved hypothetical protein, putative transcriptional regulator; Pfam match to PF08279.3 HTH_11.
      
 0.653
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
   0.645
Cla_1204
MCP-domain signal transduction protein; Pfam matches to PF08447.2 PAS_3, and to PF08447.2 PAS_3.
      
 0.620
rpmA
Pfam match to PF01016.10 Ribosomal_L27; Belongs to the bacterial ribosomal protein bL27 family.
  
   0.619
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.