Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cla_1085Conserved hypothetical integral membrane protein (DUF1212 domain protein); Pfam match to PF06738.3 DUF1212. (258 aa)    
Predicted Functional Partners:
Cla_1086
Conserved hypothetical integral membrane protein.
 
  
 0.968
Cla_1084
DedA-like protein; Pfam match to PF09335.2 SNARE_assoc.
       0.597
Cla_0731
Conserved hypothetical protein, putative periplasmic protein.
  
     0.521
ppi
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.482
Cla_1548
Conserved hypothetical protein.
  
     0.464
Cla_1243
Glycosyltransferase; Pfam match to PF05704.3 Caps_synth.
  
     0.462
Cla_1081
Conserved hypothetical protein (DUF28 domain protein); Pfam match to PF01709.11 DUF28.
       0.444
torC
Trimethylamine N-oxide reductase, cytochrome c-type subunit.
  
     0.417
Cla_0716
Conserved hypothetical protein.
  
     0.408
Cla_0051
Putative C4-dicarboxylate transporter; Pfam match to PF03606.6 DcuC.
  
     0.402
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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