STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1085Conserved hypothetical integral membrane protein (DUF1212 domain protein); Pfam match to PF06738.3 DUF1212. (258 aa)    
Predicted Functional Partners:
Cla_1086
Conserved hypothetical integral membrane protein.
 
  
 0.978
Cla_1084
DedA-like protein; Pfam match to PF09335.2 SNARE_assoc.
       0.557
Cla_0731
Conserved hypothetical protein, putative periplasmic protein.
  
     0.521
Cla_1548
Conserved hypothetical protein.
  
     0.464
Cla_1243
Glycosyltransferase; Pfam match to PF05704.3 Caps_synth.
  
     0.462
ppi
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.438
torC
Trimethylamine N-oxide reductase, cytochrome c-type subunit.
  
     0.417
Cla_0716
Conserved hypothetical protein.
  
     0.408
Cla_0051
Putative C4-dicarboxylate transporter; Pfam match to PF03606.6 DcuC.
  
     0.402
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.