Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1092ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran. (211 aa)    
Predicted Functional Partners:
lolC
Conserved hypothetical integral membrane protein, putative permease; Pfam match to PF02687.12 FtsX.
 
 0.942
rpsB
Pfam match to PF00318.11 Ribosomal_S2; Belongs to the universal ribosomal protein uS2 family.
   
   0.832
tsf
Translation elongation factor EF-Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
     
 0.831
fliR
Flagellar biosynthesis protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
       0.825
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
   0.702
argS
arginyl-tRNA synthetase; Pfam matches to PF03485.7 Arg_tRNA_synt_N, and to PF00750.10 tRNA-synt_1d.
       0.689
tatA
Sec-independent protein translocase, MttA/Hcf106 family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
     
 0.689
Cla_1090
Conserved hypothetical protein.
       0.689
Cla_1167
ABC transporter, permease protein; Pfam match to PF02687.12 FtsX.
  
 
 0.675
Cla_1166
ABC transporter, permease protein; Pfam match to PF02687.12 FtsX.
   
 
 0.624
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.