STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1104Conserved hypothetical protein, putative non-heme iron protein, hemerythrin family. (98 aa)    
Predicted Functional Partners:
Cla_1105
Conserved hypothetical protein, putative non-heme iron protein, hemerythrin family.
       0.576
dccS
Two-component sensor histidine kinase; Pfam matches to PF00512.16 HisKA, and to PF02518.17 HATPase_c.
       0.530
dccR
Two-component response regulator; Pfam matches to PF00072.15 Response_reg, and to PF00486.19 Trans_reg_C.
       0.530
maf5
Motility accessory factor; Pfam match to PF01973.9 DUF115.
  
 
   0.486
Cla_1107
Ribbon-helix-helix protein, copG family; Pfam match to PF01402.12 RHH_1.
   
   0.486
maf6
Motility accessory factor; Pfam match to PF01973.9 DUF115.
  
 
   0.480
Cla_1106
Conserved hypothetical protein, putative non-heme iron protein, hemerythrin family.
 
    
0.461
maf3
Motility accessory factor; Pfam match to PF01973.9 DUF115.
  
 
   0.452
maf2
Motility accessory factor; Pfam match to PF01973.9 DUF115.
  
 
   0.436
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.