STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1106Conserved hypothetical protein, putative non-heme iron protein, hemerythrin family. (187 aa)    
Predicted Functional Partners:
Cla_1107
Ribbon-helix-helix protein, copG family; Pfam match to PF01402.12 RHH_1.
   
   0.788
Cla_1105
Conserved hypothetical protein, putative non-heme iron protein, hemerythrin family.
       0.576
fliM
Flagellar motor switch protein FliM; Pfam match to PF02154.6 FliM.
  
 
   0.473
Cla_1104
Conserved hypothetical protein, putative non-heme iron protein, hemerythrin family.
 
    
0.461
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.