STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1109Conserved hypothetical protein, putative cytochrome c family protein; Pfam match to PF00034.12 Cytochrom_C. (145 aa)    
Predicted Functional Partners:
ccsBA
Cytochrome c biogenesis protein, CcmF/CycK/CcsA family; Pfam match to PF01578.11 Cytochrom_C_asm.
     
 0.804
ccoO
Cytochrome c oxidase, cbb3-type, subunit II; Pfam match to PF02433.6 FixO.
  
 
 0.748
livJ
Branched-chain amino-acid ABC transporter, periplasmic binding protein; Pfam match to PF01094.19 ANF_receptor.
  
    0.738
livK
Branched-chain amino-acid ABC transporter, periplasmic binding protein; Pfam match to PF01094.19 ANF_receptor.
  
    0.723
Cla_1117
Conserved hypothetical protein.
   
   0.711
livH
Branched-chain amino acid ABC transporter, permease protein; Pfam match to PF02653.7 BPD_transp_2; Belongs to the binding-protein-dependent transport system permease family.
       0.707
livM
Branched-chain amino-acid ABC transporter, permease protein; Pfam match to PF02653.7 BPD_transp_2; Belongs to the binding-protein-dependent transport system permease family.
       0.707
livG
Branched-chain amino acid ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
       0.707
livF
Branched-chain amino acid ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
       0.707
ccoN
Cytochrome c oxidase, cbb3-type, subunit I; Pfam match to PF00115.11 COX1; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.703
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.