STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccsBACytochrome c biogenesis protein, CcmF/CycK/CcsA family; Pfam match to PF01578.11 Cytochrom_C_asm. (1076 aa)    
Predicted Functional Partners:
Cla_0809
Cytochrome c biogenesis protein; Pfam match to PF01578.11 Cytochrom_C_asm.
 
  
0.949
dsbD
Thiol:disulfide interchange protein DsbD; Pfam match to PF02683.6 DsbD.
     
 0.896
trx
Thioredoxin; Pfam match to PF00085.11 Thioredoxin; Belongs to the thioredoxin family.
   
  
 0.877
livM
Branched-chain amino-acid ABC transporter, permease protein; Pfam match to PF02653.7 BPD_transp_2; Belongs to the binding-protein-dependent transport system permease family.
  
    0.826
livG
Branched-chain amino acid ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
  
    0.826
livH
Branched-chain amino acid ABC transporter, permease protein; Pfam match to PF02653.7 BPD_transp_2; Belongs to the binding-protein-dependent transport system permease family.
  
    0.824
livF
Branched-chain amino acid ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
       0.814
Cla_1109
Conserved hypothetical protein, putative cytochrome c family protein; Pfam match to PF00034.12 Cytochrom_C.
     
 0.804
Cla_1117
Conserved hypothetical protein.
       0.796
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
  
    0.788
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.