STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1119Conserved hypothetical protein. (206 aa)    
Predicted Functional Partners:
Cla_1163
Conserved hypothetical protein, possible lipoprotein thioredoxin.
  
     0.586
Cla_0407
Conserved hypothetical protein.
  
     0.472
Cla_1120
MATE efflux family protein; Pfam matches to PF01554.9 MatE, and to PF01554.9 MatE.
       0.459
Cla_1280
Conserved hypothetical protein, putative organic solvent tolerance protein; Pfam match to PF05494.3 Tol_Tol_Ttg2.
  
     0.458
Cla_1174
Conserved hypothetical integral membrane protein.
  
     0.435
Cla_1496
Conserved hypothetical protein.
  
     0.430
cmeD
Outer membrane component of efflux system; Pfam matches to PF02321.9 OEP, and to PF02321.9 OEP.
  
     0.406
Cla_1325
Conserved hypothetical protein, possible N-acetyltransferase PseH; Pfam match to PF00583.15 Acetyltransf_1.
  
     0.400
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.