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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gidBGlucose inhibited division protein B; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. (197 aa)    
Predicted Functional Partners:
trmE
tRNA modification GTPase, TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
 
  
 0.923
gidA
Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
  
  
 0.917
Cla_1126
Conserved hypothetical protein.
       0.804
ribA
GTP cyclohydrolase II; Pfam match to PF00925.11 GTP_cyclohydro2.
       0.804
parB
Chromosome partitioning protein ParB; Pfam match to PF02195.9 ParBc; Belongs to the ParB family.
  
  
 0.779
Cla_0549
Conserved hypothetical protein.
  
  
 0.683
hemB
Delta-aminolevulinic acid dehydratase; Pfam match to PF00490.12 ALAD; Belongs to the ALAD family.
       0.627
Cla_1130
Conserved hypothetical protein; Belongs to the UPF0763 family.
       0.627
hemN
Oxygen-independent coproporphyrinogen III oxidase; Pfam matches to PF04055.12 Radical_SAM, and to PF06969.7 HemN_C.
       0.627
Cla_1132
Conserved hypothetical protein, putative iron-sulfur-cluster binding protein; Pfam matches to PF02754.7 CCG, and to PF02754.7 CCG.
       0.627
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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