STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1132Conserved hypothetical protein, putative iron-sulfur-cluster binding protein; Pfam matches to PF02754.7 CCG, and to PF02754.7 CCG. (422 aa)    
Predicted Functional Partners:
glcD
Glycolate oxidase; Pfam matches to PF01565.14 FAD_binding_4, and to PF02913.10 FAD-oxidase_C.
 
 0.983
lldF
Putative iron-sulfur cluster binding protein; Pfam match to PF02589.6 DUF162.
 
 
 0.932
HprA
2-hydroxyacid dehydrogenase family protein; Pfam match to PF00389.21 2-Hacid_dh.
    
 0.905
katA
Catalase; Pfam match to PF00199.10 Catalase.
     
  0.900
Cla_0387
Conserved hypothetical protein, putative HAD superfamily hydrolase; Pfam match to PF00702.17 Hydrolase.
     
  0.900
Cla_0774
Conserved hypothetical protein, putative HAD superfamily hydrolase; Pfam match to PF00702.17 Hydrolase.
     
  0.900
lldG
Conserved hypothetical protein (DUF162 domain protein); Pfam match to PF02589.6 DUF162.
 
 
 0.874
hemB
Delta-aminolevulinic acid dehydratase; Pfam match to PF00490.12 ALAD; Belongs to the ALAD family.
       0.804
Cla_1130
Conserved hypothetical protein; Belongs to the UPF0763 family.
       0.804
hemN
Oxygen-independent coproporphyrinogen III oxidase; Pfam matches to PF04055.12 Radical_SAM, and to PF06969.7 HemN_C.
       0.804
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.