STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Cla_1138Conserved hypothetical protein, probable SCO1/SenC family protein; Pfam match to PF02630.5 SCO1-SenC. (185 aa)    
Predicted Functional Partners:
Cla_1136
Conserved hypothetical protein (DUF461 domain protein); Pfam match to PF04314.4 DUF461.
 
   
 0.961
Cla_1137
Conserved hypothetical protein.
     
 0.829
dfp
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
     
  0.754
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.642
pgp2
Conserved hypothetical protein.
       0.642
petA
Ubiquinol cytochrome c oxidoreductase, 2Fe-2S subunit; Pfam match to PF00355.17 Rieske.
  
    0.614
Cla_1133
Conserved hypothetical protein.
       0.554
trxC
Possible periplasmic thioredoxin; Pfam match to PF00085.11 Thioredoxin.
  
 
 0.521
Cla_1212
Conserved hypothetical lipoprotein; Pfam match to PF00578.12 AhpC-TSA.
  
 
 0.521
petB
Ubiquinol cytochrome c oxidoreductase, cytochrome b subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
   
 0.475
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.