STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1167ABC transporter, permease protein; Pfam match to PF02687.12 FtsX. (430 aa)    
Predicted Functional Partners:
Cla_1165
ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
 
 
 0.985
Cla_1168
Conserved hypothetical integral membrane protein (YHS domain protein); Pfam match to PF04945.4 YHS.
 
  
 0.975
Cla_1170
Iron permease, FTR1 family; Pfam match to PF03239.5 FTR1.
 
    0.936
p19
19 kDa periplasmic protein.
 
    0.935
macB
ABC transporter, ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.889
Cla_1163
Conserved hypothetical protein, possible lipoprotein thioredoxin.
 
     0.889
Cla_1164
Conserved hypothetical protein, possible lipoprotein thioredoxin; Pfam match to PF08534.1 Redoxin.
 
     0.883
Cla_1166
ABC transporter, permease protein; Pfam match to PF02687.12 FtsX.
 
    
0.860
Cla_1092
ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
  
 
 0.665
lolA
Outer membrane lipoprotein carrier protein, LolA family; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.624
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.