STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1167ABC transporter, permease protein; Pfam match to PF02687.12 FtsX. (430 aa)    
Predicted Functional Partners:
Cla_1165
ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
 
 
 0.982
Cla_1168
Conserved hypothetical integral membrane protein (YHS domain protein); Pfam match to PF04945.4 YHS.
 
  
 0.961
Cla_1170
Iron permease, FTR1 family; Pfam match to PF03239.5 FTR1.
 
     0.919
p19
19 kDa periplasmic protein.
 
     0.917
Cla_1163
Conserved hypothetical protein, possible lipoprotein thioredoxin.
 
     0.900
Cla_1164
Conserved hypothetical protein, possible lipoprotein thioredoxin; Pfam match to PF08534.1 Redoxin.
 
     0.898
Cla_1166
ABC transporter, permease protein; Pfam match to PF02687.12 FtsX.
 
    
0.874
macB
ABC transporter, ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.836
Cla_1092
ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
  
 
 0.675
ftsE
Cell division ATP-binding protein FtsE; Pfam match to PF00005.18 ABC_tran.
   
 
 0.624
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.