STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1168Conserved hypothetical integral membrane protein (YHS domain protein); Pfam match to PF04945.4 YHS. (473 aa)    
Predicted Functional Partners:
p19
19 kDa periplasmic protein.
 
  
 0.977
Cla_1166
ABC transporter, permease protein; Pfam match to PF02687.12 FtsX.
 
  
 0.975
Cla_1167
ABC transporter, permease protein; Pfam match to PF02687.12 FtsX.
 
  
 0.975
Cla_1170
Iron permease, FTR1 family; Pfam match to PF03239.5 FTR1.
 
  
 0.975
Cla_1165
ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
 
    0.955
Cla_1163
Conserved hypothetical protein, possible lipoprotein thioredoxin.
 
     0.932
Cla_1164
Conserved hypothetical protein, possible lipoprotein thioredoxin; Pfam match to PF08534.1 Redoxin.
 
     0.919
flgE1
Flagellar hook protein FlgE; Pfam matches to PF00460.11 Flg_bb_rod, and to PF07559.5 FlaE.
    
   0.814
flgG1
Flagellar distal rod protein FlgG; Pfam matches to PF00460.11 Flg_bb_rod, and to PF06429.4 DUF1078; Belongs to the flagella basal body rod proteins family.
    
   0.814
flgG2
Flagellar distal rod protein FlgG; Pfam match to PF00460.11 Flg_bb_rod.
    
   0.814
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.