Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
p1919 kDa periplasmic protein. (173 aa)    
Predicted Functional Partners:
Cla_1170
Iron permease, FTR1 family; Pfam match to PF03239.5 FTR1.
 
  
 0.979
Cla_1168
Conserved hypothetical integral membrane protein (YHS domain protein); Pfam match to PF04945.4 YHS.
 
  
 0.939
Cla_1167
ABC transporter, permease protein; Pfam match to PF02687.12 FtsX.
 
     0.917
Cla_1166
ABC transporter, permease protein; Pfam match to PF02687.12 FtsX.
 
     0.916
Cla_1165
ABC transporter, ATP-binding protein; Pfam match to PF00005.18 ABC_tran.
 
     0.852
Cla_1526
ABC transporter, periplasmic binding protein; Pfam match to PF01547.16 SBP_bac_1.
   
  
 0.775
Cla_1164
Conserved hypothetical protein, possible lipoprotein thioredoxin; Pfam match to PF08534.1 Redoxin.
 
     0.743
Cla_1163
Conserved hypothetical protein, possible lipoprotein thioredoxin.
 
     0.723
metC
Cystathionase beta-lyase; Pfam match to PF01053.11 Cys_Met_Meta_PP.
  
   
 0.700
ahpC
Alkyl hydroperoxide reductase C22 protein, AhpC/TsaA family; Pfam match to PF00578.12 AhpC-TSA.
      
 0.692
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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