STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cla_1174Conserved hypothetical integral membrane protein. (304 aa)    
Predicted Functional Partners:
mraW
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
    0.806
Cla_1496
Conserved hypothetical protein.
  
     0.760
trxC
Possible periplasmic thioredoxin; Pfam match to PF00085.11 Thioredoxin.
  
     0.740
holA
Conserved hypothetical protein; Pfam match to PF06144.4 DNA_pol3_delta.
  
     0.725
ybgF
Conserved hypothetical protein.
  
     0.721
Cla_0370
Conserved hypothetical protein.
  
     0.707
cmeD
Outer membrane component of efflux system; Pfam matches to PF02321.9 OEP, and to PF02321.9 OEP.
  
     0.705
Cla_0114
Conserved hypothetical protein.
  
     0.703
flgL
Flagellin family protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
    0.685
Cla_1492
Conserved hypothetical protein.
  
     0.665
Your Current Organism:
Campylobacter lari
NCBI taxonomy Id: 306263
Other names: C. lari RM2100, Campylobacter lari RM2100, Campylobacter lari str. RM2100, Campylobacter lari strain RM2100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.